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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015933271.1_cds_XP_016479649.1_71169
CDS Infomation

[gene=LOC107800899] [db_xref=GeneID:107800899] [protein=pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like] [protein_id=XP_016479649.1] [location=complement(join(31198..32025,32282..33288,35029..35338))] [gbkey=CDS]
Sequence

ATGAAAGAAGAAGAGCCAAATCTCGTTCTTAAAACAACTCTGCCCAACGACATTTTCGCA
TCTGCGGTCCCTTGGTTGCTTCTGCGGCTTCAATCTCGCACCTCCGAGAACCCAGGCCAG
GTCGTTGGCAGTATTTGCGATTCCCGTTGCGCACATGCGCCCCCGCTTCTACAATTCTCC
TCCGCATGTGCGGTTCCGTTTCTGCGCCAAAACGATCGCATCTGTGATCCCAGCACTGCC
CAACCAAAATCTGCTCCTTCGCTTGCCTGGCCGCTTCTGCGGCGTCGCATTTGCGGCCTT
TTTTCCACAATGACTCCAGTTACCAAAATTCACCAGAAAGAATATATCTGTCTCTTAACA
TCAAAAGCGAATTTAGGCAAGTTAGAAGAGCTGGAAGAAGTAGAATCAAGACTCGTTTCA
CTTGTTTCAAAATGCCCCAATCTGAAAGTCCTCCATCAAATCCATGCCCATATAATCACT
ACTCATTCATTTCTTCCACTTCCCACTATCTCCTTTATTCTTTCCAAAGTTCTCGCCTTT
GCAGCCCTTTCTCCCAATGGGAGCCTCAATTATGCCAAGAGGTTGTTCACCCAAATCCCA
AACCCTAGCATTTTCTCTTATAATTCTCTCATTAGAGGTTTTCTTGAATCCCAAAAAATT
CCATCTCAAGAACCCATTTTTATTTTCAAGAAACTGCTCAAGAAAAATTACCCAAAAGCA
AATACATTTACTTTAGCATTTGTTTTAAAGTCATGTTCAATTGTGACTGCATTTAAAGAA
GGCCAACAACTGCATAAGCATGTAATTCAATCCGGGTTTGGATCAAGCCCCTTTGTTCAA
ACCTCATTGTTGAATTTATACGCAAAATGTGAGGAGATTCGGTTGGCGGAGAAAGTGTTC
GATGAAATTCCTGAGAGAAATGTGGTTGCTTGGAGTGCAATGATTAGTGGGTATTCGAGA
CTTGGGATGGTGAATGAGTCTTTAAGTTTGTTTAGGGAAATGCAGAAGACAGGTGTTTTG
CCCGATAAGGTGACAATGGTGAGCGTGATTTCGGCTTGTGCTATGTCTGGGGCCTTAGAT
TTGGGGAGGTGGGTGCATGCTTATATTGACAGGAGATTGATTGAGATTGATCTTGAGCTT
TGTACTGCGCTTGTTAATATGTATGCAAAGTGTGGATGCATTGAGAAGGCAATCGAGGTA
TTTGAAGCGATGCCTGTTAAAGATGCCAAGGCATGGAGCTCAATGATAGTTGGCTTGGCA
ATAAATGGGCTAGCAGAATATGCATTGGTGACCTTTTCCAGGATGGACAAAGCTAAGGTG
GAACCTAACCATGTGACGCTAGTTGGAGTTCTTATGGCATGTGCTCATAGCGGACTAGTT
TTTGAAGGGAAAAGGTATTGGGCAAGCATGATTGAGTCTGGTATTGAGCCATCTTTAGAG
CATTATGGCTGCATGGTAGATCTGTTGAGCCGTTCAAACTTAATTGATGAAGCTTATTCA
TTTGTTGAAGCCATGCCACTCGCCCCGTGTCCAGCAATATTGCGCACATTACTTGTTGGG
TGCAAAAAGAACAAGATCTTGGACAAAGGTGAAATTCTTGGCCAGCATCTCATTGAATTA
GAGCCATGGAATGCAGAGAACTATATCCTACTGTCTAGTTTGTATGCATCGGTATCAGAC
TGGGAAAAAATGCGCCACGTGAGGAAACAGATGAAAGACAAAGGGATTAAGGCAATGCCA
GGATGCAGTTCCATTGAAGTTGACGGTCTTGTGCATGAGTTCATAATGGGTGATTGGTCG
CACCCTGAAGCTGAGGAGATCAAAGAAGTCCTAAGCGATATATCTCAAAGGGTATATTTT
GCAGGTCATGAACCTTGGATTGCTACTATACTGCACAATGTGAGTGATGAAGAGAAGGAA
ATTGCTCTGTGTGAGCACAGTGAAAGATTGGCTATTGCTTTTGGCCTTTTGAAGACAAAA
GCACCAACAGTGATTAGAATAGTGAAGAATCTAAGGGTATGTAGGGATTGTCATGAAGTG
ACAAAGATAATTAGTAGATTATACAACAGAGAGATCATTGTTAGGGACAGAGTTAGGTTC
CACAGGTTTGTCAATGGAGTATGTTCTTGCAGAGATTTTTGGTAA

Peptide Sequence

PEP ID

XP_016479649.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like [Nicotiana tabacum]
Sequence

MKEEEPNLVLKTTLPNDIFASAVPWLLLRLQSRTSENPGQVVGSICDSRCAHAPPLLQFS
SACAVPFLRQNDRICDPSTAQPKSAPSLAWPLLRRRICGLFSTMTPVTKIHQKEYICLLT
SKANLGKLEELEEVESRLVSLVSKCPNLKVLHQIHAHIITTHSFLPLPTISFILSKVLAF
AALSPNGSLNYAKRLFTQIPNPSIFSYNSLIRGFLESQKIPSQEPIFIFKKLLKKNYPKA
NTFTLAFVLKSCSIVTAFKEGQQLHKHVIQSGFGSSPFVQTSLLNLYAKCEEIRLAEKVF
DEIPERNVVAWSAMISGYSRLGMVNESLSLFREMQKTGVLPDKVTMVSVISACAMSGALD
LGRWVHAYIDRRLIEIDLELCTALVNMYAKCGCIEKAIEVFEAMPVKDAKAWSSMIVGLA
INGLAEYALVTFSRMDKAKVEPNHVTLVGVLMACAHSGLVFEGKRYWASMIESGIEPSLE
HYGCMVDLLSRSNLIDEAYSFVEAMPLAPCPAILRTLLVGCKKNKILDKGEILGQHLIEL
EPWNAENYILLSSLYASVSDWEKMRHVRKQMKDKGIKAMPGCSSIEVDGLVHEFIMGDWS
HPEAEEIKEVLSDISQRVYFAGHEPWIATILHNVSDEEKEIALCEHSERLAIAFGLLKTK
APTVIRIVKNLRVCRDCHEVTKIISRLYNREIIVRDRVRFHRFVNGVCSCRDFW

Transcript Sequence

Gene sequence data has not been registered.